Interface Patterns

All Known Subinterfaces:
Alignment
All Known Implementing Classes:
BasicAlignment, BootstrappedAlignment, JackknifedAlignment, ResampledAlignment
public interface Patterns
An interface representing a set of site patterns.
Version:
$Id: Patterns.java 185 2006-01-23 23:03:18Z rambaut $
Author:
Andrew Rambaut, Alexei Drummond

  • Method Details

    • getPatternCount

      int getPatternCount()

    • getPatternLength

      int getPatternLength()

    • getPatterns

      List<Pattern> getPatterns()
      Get a list of all the patterns
      Returns:
      the list

    • getTaxa

      List<Taxon> getTaxa()
      Returns:
      the list of taxa that the state values correspond to.

    • getSequenceType

      SequenceType getSequenceType()
      Returns:
      the data type of the states in these site patterns.