Class MostProbableTopology

java.lang.Object
jebl.evolution.trees.MostProbableTopology
public class MostProbableTopology extends Object
Given a set of trees determine the most probable trees, i.e. the most frequent topologies. Set branch lengths / node heights from set conditional on topology.
Version:
$Id: MostProbableTopology.java 889 2008-02-27 01:13:21Z matt_kearse $
Author:
Joseph Heled

  • Constructor Details

    • MostProbableTopology

      public MostProbableTopology(Collection<? extends Tree> trees)
      Parameters:
      trees -

  • Method Details

    • get

      public List<Tree> get(int max, double threshold)
      Get the most probable tree(s)
      Parameters:
      max - At most this number of trees (max invalid input: '<'= 0 is ignored)
      threshold - (in [01]) return first K topologies whose total frequencey is greater that threshold.
      Returns:
      probable trees