Uses of Enum Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel
Packages that use TreeBuilderFactory.DistanceModel
Package
Description
Provides classes and interfaces for pairwise alignment of two sequences.
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Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align
Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionSequenceAlignmentsDistanceMatrix.getDefaultDistanceModel(List<Sequence> seqs) Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionAlignmentTreeBuilderFactory.build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model) AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener) AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModelModifierConstructorDescriptionSequenceAlignmentsDistanceMatrix(List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model) -
Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees
Subclasses with type arguments of type TreeBuilderFactory.DistanceModel in jebl.evolution.treesModifier and TypeClassDescriptionstatic enumSupported pairwise distance methodsMethods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static TreeBuilderFactory.DistanceModel[]TreeBuilderFactory.DistanceModel.values()Returns an array containing the constants of this enum class, in the order they are declared.